@scottclee but what you're showing has nothing to do with Wappler auto updating files..
It's in fact a bug of the git panel which has been reported by me and other users a few times..
This is the popup that allows you to update your files:
By clicking update then your files will be automatically overwritten by the selected channel (stable/beta)
Your problem is about discarding changes on the git thing (deleting new files for example)..
Here's my bug report
https://community.wappler.io/t/conflicts-prevent-checkout/55571
Here's another one with a workaround (I think that will discard all the changes involved)
https://community.wappler.io/t/git-help-needed-how-to-delete-all-the-newly-created-files/57248
And here's what patrick says about:
This is considered a bug
If you run git clean -f on terminal, those files will dissapear, use it wisely